fredag 14 juni 2019

Hyperhomocysteinemia ja B-vitamiinijoukko

https://www.ncbi.nlm.nih.gov/pubmed/27929536# Abstract
Hyperhomocysteinemia (HHcy) is a well-known risk factor for stroke; however, its underlying molecular mechanism remains unclear. Using both mouse and cell culture models, we have provided evidence that impairment of autophagy has a central role in HHcy-induced cellular injury in the mouse brain. We observed accumulation of LC3B-II and p62 that was associated with increased MTOR signaling in human and mouse primary astrocyte cell cultures as well as a diet-induced mouse model of HHcy, HHcy decreased lysosomal membrane protein LAMP2, vacuolar ATPase (ATP6V0A2), and protease cathepsin D, suggesting that lysosomal dysfunction also contributed to the autophagic defect.
Moreover, HHcy increased unfolded protein response (UPR).

  Interestingly, Vitamin B supplementation restored autophagic flux, alleviated ER stress, and reversed lysosomal dysfunction due to HHCy.

 Furthermore, the autophagy inducer, rapamycin was able to relieve ER stress and reverse lysosomal dysfunction caused by HHcy in vitro.

 Inhibition of autophagy by HHcy exacerbated cellular injury during oxygen and glucose deprivation and reperfusion (OGD/R), and oxidative stress. These effects were prevented by Vitamin B co-treatment, suggesting that it may be helpful in relieving detrimental effects of HHcy in ischemia/reperfusion or oxidative stress. Collectively, these findings show that Vitamin B therapy can reverse defects in cellular autophagy and ER stress due to HHcy; and thus may be a potential treatment to reduce ischemic damage caused by stroke in patients with HHcy.
PMID:
27929536
PMCID:
PMC5260994
DOI:
10.1038/cddis.2016.374
[Indexed for MEDLINE]
Free PMC Article
Hyperhomocysteinemia (HHcy) is a clinical condition characterized by increased levels of total plasma homocysteine (Hcy) and carries an increased risk for stroke.1 
 Hcy is a methionine precursor and a sulphur amino acid intermediate in the (re)methylation and trans-sulfuration pathways.
  There are three major dietary cofactors in Hcy metabolism: Vitamin B6, B12, and folate. Deficiencies in these vitamins were more prevalent in the developing countries and may account for the increased incidence of HHcy and stroke found in those countries.2
  Additionally, decreased folate, Vitamin B6, and Vitamin B12 plasma levels were associated with HHcy;3 
moreover, Vitamin B therapy reduced both Hcy levels and stroke risk.4, 5 
HHcy is frequently categorized into three categories:
 moderate (plasma Hcy concentrations of 15–30 μmol/l), 
intermediate (plasma Hcy concentrations of 31–100 μmol/l),
and severe (plasma Hcy concentrations 100 μmol/l).6

CTH (1p31.1) Kystatiinigammalyaasi

CTH cystathionine gamma-lyase [ Homo sapiens (human) ]
Summary. 
This gene encodes a cytoplasmic enzyme in the trans-sulfuration pathway (TS)  that converts cystathione (cystat)  derived from methionine (Met) into cysteine (Cys). 
Glutathione (GSH) synthesis in the liver is dependent upon the availability of cysteine. 
Mutations in this gene cause cystathioninuria. Alternative splicing of this gene results in three transcript variants encoding different isoforms. [provided by RefSeq, Jun 2010]
Expression Biased expression in liver (RPKM 17.3), adrenal (RPKM 4.0) and 12 other tissues See more Orthologs mouse all

Preferred Names
cystathionine gamma-lyase
Names
cystathionase (cystathionine gamma-lyase)
cysteine desulfhydrase
cysteine-protein sulfhydrase
gamma-cystathionase
homoserine deaminase
homoserine dehydratase
Related
ENSP00000413407.2, ENST00000411986.6
Conserved Domains (2) summary
PRK09028
Location:19347
PRK09028; cystathionine beta-lyase; Provisional
pfam01053
Location:19347

Cys/Met metabolizm PLP-dependent (B6 vitamin)  enzyme
This family includes enzymes involved in cysteine and methionine metabolizm. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.
Related articles in PubMed

CBS (21q22.3) Cystationibetasyntaasi

https://www.ncbi.nlm.nih.gov/gene/875
Official Symbol
CBS
Official Full Name
cystathionine-beta-synthaseprovided by HGNC
Gene type
protein coding
Also known as
CBSL; HIP4
SummaryThe protein encoded by this gene acts as a homotetramer to catalyze the conversion of homocysteine to cystathionine, the first step in the transsulfuration pathway. The encoded protein is allosterically activated by adenosyl-methionine and uses pyridoxal phosphate as a cofactor. Defects in this gene can cause cystathionine beta-synthase deficiency (CBSD), which can lead to homocystinuria. This gene is a major contributor to cellular hydrogen sulfide (H2S)  production. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Feb 2016]
Expression Biased expression in liver (RPKM 30.2), brain (RPKM 11.6) and 6 other tissues See more
Orthologs mouse all
Preferred Names
cystathionine beta-synthase
Names
Cystathionine beta-synthase-like protein
beta-thionase
methylcysteine synthase
serine sulfhydrase
 
Related articles in PubMed

RDS , TST (22q12.3). Rhodanaasi, tiosulfaattisulfurtransferaasi

https://www.ncbi.nlm.nih.gov/gene/7263
 Rhodanaasi entsyymi on mitokondriaalinen ja katalysoi tiosulfaatin ja syanidin muuttumista tiosyanaatiksi ja sulfiitiksi. Siis aloittaa syanidin detoksikaatiota.
Official Symbol
TSTprovided by HGNC
Official Full Name
thiosulfate sulfurtransferaseprovided by HGNC
Also known as
RDS
Summary
This is one of two neighboring genes encoding similar proteins that each contain two rhodanese domains. The encoded protein is localized to the mitochondria and catalyzes the conversion of thiosulfate and cyanide to thiocyanate and sulfite. In addition, the protein interacts with 5S ribosomal RNA and facilitates its import into the mitochondria. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2012]
Expression
Broad expression in colon (RPKM 83.2), liver (RPKM 73.2) and 22 other tissues See more
Orthologs  mouse all
Related articles in PubMed
 
Amino-terminal dimerization, NRDP1-rhodanese interaction, and inhibited catalytic domain conformation of the ubiquitin-specific protease 8 (USP8).
Ubiquitin-specific protease 8 (USP8) (DUB) hydrolyzes mono and polyubiquitylated targets such as epidermal growth factor receptors (EGFR) and is involved in clathrin-mediated internalization. In 1182 residues, USP8 contains multiple domains, including coiled-coil, rhodanese, and catalytic domains. We report the first high-resolution crystal structures of these domains and discuss their implications for USP8 function. The amino-terminal domain is a homodimer with a novel fold. It is composed of two five-helix bundles, where the first helices are swapped, and carboxyl-terminal helices are extended in an antiparallel fashion. The structure of the rhodanese domain, determined in complex with the E3 ligase NRDP1, reveals the canonical rhodanese fold but with a distorted primordial active site. The USP8 (DUB)  recognition domain of NRDP1 (RNF41)  has a novel protein fold that interacts with a conserved peptide loop of the rhodanese domain. A consensus sequence of this loop is found in other NRDP1 targets, suggesting a common mode of interaction. The structure of the carboxyl-terminal catalytic domain of USP8 exhibits the conserved tripartite architecture but shows unique traits. Notably, the active site, including the ubiquitin binding pocket, is in a closed conformation, incompatible with substrate binding. The presence of a zinc ribbon subdomain near the ubiquitin binding site further suggests a polyubiquitin-specific binding site and a mechanism for substrate induced conformational changes.
 E3 ubikitiiniligaasi RNF41 https://www.ncbi.nlm.nih.gov/gene/10193
 
 
USP8 
Also known as
UBPY; PITA4; SPG59; HumORF8
Summary This gene encodes a protein that belongs to the ubiquitin-specific processing protease family of proteins. The encoded protein is thought to regulate the morphology of the endosome by ubiquitination of proteins on this organelle and is involved in cargo sorting and membrane trafficking at the early endosome stage. This protein is required for the cell to enter the S phase of the cell cycle and also functions as a positive regulator in the Hedgehog signaling pathway in development. Pseudogenes of this gene are present on chromosomes 2 and 6. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]
Expression Ubiquitous expression in testis (RPKM 16.5), thyroid (RPKM 12.8) and 25 other tissues See more
NP_001122082.1  ubiquitin carboxyl-terminal hydrolase 8 isoform a
 
Conserved Domains (5) summary
smart00450
Location:199310
RHOD; Rhodanese Homology Domain An alpha beta fold found duplicated in the Rhodanese protein. The Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
TIGR02794
Location:375547
tolA_full; TolA protein
pfam00443
Location:7771106
UCH; Ubiquitin carboxyl-terminal hydrolase
pfam08969
Location:8115
USP8_dimer; USP8 dimerisation domain
pfam10243
Location:474646
MIP-T3; Microtubule-binding protein MIP-T3

MPST (22q12.3) Merkaptopyruvaatti sulfurtransferaasi, MST, TST2, TUM1

 Siirtää rikkijonin (S)  syanidille (CN)  merkaptopalorypälehapolta.
Official Symbol MPST
Official Full Name mercaptopyruvate sulfurtransferase
Gene type protein coding
Also known as MST; TST2; TUM1
Summary  This protein encoded by this gene catalyzes the transfer of a sulfur ion from 3-mercaptopyruvate to cyanide or other thiol compounds. It may be involved in cysteine degradation and cyanide detoxification. There is confusion in literature between this protein (mercaptopyruvate sulfurtransferase, MPST), which appears to be cytoplasmic, and thiosulfate sulfurtransferase (rhodanese, TST, GeneID:7263), which is a mitochondrial protein.
 Deficiency in MPST activity has been implicated in a rare inheritable disorder known as mercaptolactate-cysteine disulfiduria (MCDU). Alternatively spliced transcript variants encoding same or different isoforms have been identified for this gene. [provided by RefSeq, Jul 2008]
Expression
Ubiquitous expression in duodenum (RPKM 33.5), liver (RPKM 30.3) and 25 other tissues See more
Orthologsmouse all
 

Cys/Met aineenvaihdunnan B6 vitamiinista riippuvat entsyymit



Cys/Met metabolizm PLP-dependent (B6 vitamin)  enzyme
This family includes enzymes involved in cysteine and methionine metabolizm. The following are members:

Cystathionine gamma-lyase,  CTH  (CSE)
Cystathionine gamma-synthase, 
Cystathionine beta-lyase, ( bakteereilla   d-aminohappoav: ssa   beta-lyaasi)
Cystathione beta synthase  CBS

Tuottuu  myös H2S

 OAH/OAS sulfhydrylase,
O-succinylhomoserine sulfhydrylase
(Sulfhydrylaaseja ei ole ihmisellä, vaikka ihmsen mikrobiomissa niitä saattaa löytyä) . 

All of these members participate is slightly different reactions.
All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.

( Entsyyminimiä on luomakunnasta, joten täytyy hakea ihmisen vastaava entsyymi, jos sitä löytyy)


 

tisdag 6 februari 2018

Ps. 89:15,16

6.2.2018,11:11.Sana psalmista 86:15,16.
(A Maskil of Ethan the Ezrahite) Blessed are the people who know the festal shout, who walk , o Lord, in the light of thy countenance; who exult in thy name all the day, and extol thy righteousness.