fredag 14 juni 2019

RDS , TST (22q12.3). Rhodanaasi, tiosulfaattisulfurtransferaasi

https://www.ncbi.nlm.nih.gov/gene/7263
 Rhodanaasi entsyymi on mitokondriaalinen ja katalysoi tiosulfaatin ja syanidin muuttumista tiosyanaatiksi ja sulfiitiksi. Siis aloittaa syanidin detoksikaatiota.
Official Symbol
TSTprovided by HGNC
Official Full Name
thiosulfate sulfurtransferaseprovided by HGNC
Also known as
RDS
Summary
This is one of two neighboring genes encoding similar proteins that each contain two rhodanese domains. The encoded protein is localized to the mitochondria and catalyzes the conversion of thiosulfate and cyanide to thiocyanate and sulfite. In addition, the protein interacts with 5S ribosomal RNA and facilitates its import into the mitochondria. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2012]
Expression
Broad expression in colon (RPKM 83.2), liver (RPKM 73.2) and 22 other tissues See more
Orthologs  mouse all
Related articles in PubMed
 
Amino-terminal dimerization, NRDP1-rhodanese interaction, and inhibited catalytic domain conformation of the ubiquitin-specific protease 8 (USP8).
Ubiquitin-specific protease 8 (USP8) (DUB) hydrolyzes mono and polyubiquitylated targets such as epidermal growth factor receptors (EGFR) and is involved in clathrin-mediated internalization. In 1182 residues, USP8 contains multiple domains, including coiled-coil, rhodanese, and catalytic domains. We report the first high-resolution crystal structures of these domains and discuss their implications for USP8 function. The amino-terminal domain is a homodimer with a novel fold. It is composed of two five-helix bundles, where the first helices are swapped, and carboxyl-terminal helices are extended in an antiparallel fashion. The structure of the rhodanese domain, determined in complex with the E3 ligase NRDP1, reveals the canonical rhodanese fold but with a distorted primordial active site. The USP8 (DUB)  recognition domain of NRDP1 (RNF41)  has a novel protein fold that interacts with a conserved peptide loop of the rhodanese domain. A consensus sequence of this loop is found in other NRDP1 targets, suggesting a common mode of interaction. The structure of the carboxyl-terminal catalytic domain of USP8 exhibits the conserved tripartite architecture but shows unique traits. Notably, the active site, including the ubiquitin binding pocket, is in a closed conformation, incompatible with substrate binding. The presence of a zinc ribbon subdomain near the ubiquitin binding site further suggests a polyubiquitin-specific binding site and a mechanism for substrate induced conformational changes.
 E3 ubikitiiniligaasi RNF41 https://www.ncbi.nlm.nih.gov/gene/10193
 
 
USP8 
Also known as
UBPY; PITA4; SPG59; HumORF8
Summary This gene encodes a protein that belongs to the ubiquitin-specific processing protease family of proteins. The encoded protein is thought to regulate the morphology of the endosome by ubiquitination of proteins on this organelle and is involved in cargo sorting and membrane trafficking at the early endosome stage. This protein is required for the cell to enter the S phase of the cell cycle and also functions as a positive regulator in the Hedgehog signaling pathway in development. Pseudogenes of this gene are present on chromosomes 2 and 6. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]
Expression Ubiquitous expression in testis (RPKM 16.5), thyroid (RPKM 12.8) and 25 other tissues See more
NP_001122082.1  ubiquitin carboxyl-terminal hydrolase 8 isoform a
 
Conserved Domains (5) summary
smart00450
Location:199310
RHOD; Rhodanese Homology Domain An alpha beta fold found duplicated in the Rhodanese protein. The Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
TIGR02794
Location:375547
tolA_full; TolA protein
pfam00443
Location:7771106
UCH; Ubiquitin carboxyl-terminal hydrolase
pfam08969
Location:8115
USP8_dimer; USP8 dimerisation domain
pfam10243
Location:474646
MIP-T3; Microtubule-binding protein MIP-T3

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